prc protein (Haemophilus ducreyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

prc

Tail-specific protease; Belongs to the peptidase S41A family. (688 aa)

Predicted Functional Partners:

nlpI

0.885

proQ

0.778

HD_1481

0.672

HD_1031

0.564

tadD

0.556

HD_1011

0.528

HD_1658

0.521

ecfE

0.505

oadA

0.425

Your Current Organism:

Haemophilus ducreyi

NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HD_1011	prc	HD_1011	HD_1010	Hypothetical protein.	Tail-specific protease; Belongs to the peptidase S41A family.	0.528
HD_1011	proQ	HD_1011	HD_1009	Hypothetical protein.	Possible ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.410
HD_1031	prc	HD_1031	HD_1010	Converved hypothetical protein.	Tail-specific protease; Belongs to the peptidase S41A family.	0.564
HD_1481	nlpI	HD_1481	HD_1589	Putative lipoprotein.	Lipoprotein NlpI-like protein; May be involved in cell division.	0.615
HD_1481	prc	HD_1481	HD_1010	Putative lipoprotein.	Tail-specific protease; Belongs to the peptidase S41A family.	0.672
HD_1658	prc	HD_1658	HD_1010	Probable membrane protein.	Tail-specific protease; Belongs to the peptidase S41A family.	0.521
ecfE	prc	HD_1192	HD_1010	Protease EcfE.	Tail-specific protease; Belongs to the peptidase S41A family.	0.505
nlpI	HD_1481	HD_1589	HD_1481	Lipoprotein NlpI-like protein; May be involved in cell division.	Putative lipoprotein.	0.615
nlpI	prc	HD_1589	HD_1010	Lipoprotein NlpI-like protein; May be involved in cell division.	Tail-specific protease; Belongs to the peptidase S41A family.	0.885
nlpI	proQ	HD_1589	HD_1009	Lipoprotein NlpI-like protein; May be involved in cell division.	Possible ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.754
oadA	prc	HD_0783	HD_1010	Oxaloacetate decarboxylase alpha chain.	Tail-specific protease; Belongs to the peptidase S41A family.	0.425
prc	HD_1011	HD_1010	HD_1011	Tail-specific protease; Belongs to the peptidase S41A family.	Hypothetical protein.	0.528
prc	HD_1031	HD_1010	HD_1031	Tail-specific protease; Belongs to the peptidase S41A family.	Converved hypothetical protein.	0.564
prc	HD_1481	HD_1010	HD_1481	Tail-specific protease; Belongs to the peptidase S41A family.	Putative lipoprotein.	0.672
prc	HD_1658	HD_1010	HD_1658	Tail-specific protease; Belongs to the peptidase S41A family.	Probable membrane protein.	0.521
prc	ecfE	HD_1010	HD_1192	Tail-specific protease; Belongs to the peptidase S41A family.	Protease EcfE.	0.505
prc	nlpI	HD_1010	HD_1589	Tail-specific protease; Belongs to the peptidase S41A family.	Lipoprotein NlpI-like protein; May be involved in cell division.	0.885
prc	oadA	HD_1010	HD_0783	Tail-specific protease; Belongs to the peptidase S41A family.	Oxaloacetate decarboxylase alpha chain.	0.425
prc	proQ	HD_1010	HD_1009	Tail-specific protease; Belongs to the peptidase S41A family.	Possible ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.778
prc	tadD	HD_1010	HD_1301	Tail-specific protease; Belongs to the peptidase S41A family.	Tight adherence protein D.	0.556