Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HD_1021 | HD_1022 | HD_1021 | HD_1022 | Hypothetical protein. | Hypothetical protein. | 0.790 |
HD_1021 | HD_1023 | HD_1021 | HD_1023 | Hypothetical protein. | Histidine triad, HIT-like protein. | 0.790 |
HD_1021 | rnhB | HD_1021 | HD_1026 | Hypothetical protein. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.609 |
HD_1021 | rsgA | HD_1021 | HD_1027 | Hypothetical protein. | Conserved hypothetical protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.537 |
HD_1021 | yfeC | HD_1021 | HD_1025 | Hypothetical protein. | Iron (chelated) transport system membrane protein. | 0.561 |
HD_1021 | yfeD | HD_1021 | HD_1024 | Hypothetical protein. | Iron (chelated) transport system membrane protein. | 0.561 |
HD_1022 | HD_1021 | HD_1022 | HD_1021 | Hypothetical protein. | Hypothetical protein. | 0.790 |
HD_1022 | HD_1023 | HD_1022 | HD_1023 | Hypothetical protein. | Histidine triad, HIT-like protein. | 0.892 |
HD_1022 | rnhB | HD_1022 | HD_1026 | Hypothetical protein. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.562 |
HD_1022 | rsgA | HD_1022 | HD_1027 | Hypothetical protein. | Conserved hypothetical protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.537 |
HD_1022 | yfeC | HD_1022 | HD_1025 | Hypothetical protein. | Iron (chelated) transport system membrane protein. | 0.561 |
HD_1022 | yfeD | HD_1022 | HD_1024 | Hypothetical protein. | Iron (chelated) transport system membrane protein. | 0.561 |
HD_1023 | HD_1021 | HD_1023 | HD_1021 | Histidine triad, HIT-like protein. | Hypothetical protein. | 0.790 |
HD_1023 | HD_1022 | HD_1023 | HD_1022 | Histidine triad, HIT-like protein. | Hypothetical protein. | 0.892 |
HD_1023 | rnhB | HD_1023 | HD_1026 | Histidine triad, HIT-like protein. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.582 |
HD_1023 | rsgA | HD_1023 | HD_1027 | Histidine triad, HIT-like protein. | Conserved hypothetical protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.558 |
HD_1023 | yfeC | HD_1023 | HD_1025 | Histidine triad, HIT-like protein. | Iron (chelated) transport system membrane protein. | 0.561 |
HD_1023 | yfeD | HD_1023 | HD_1024 | Histidine triad, HIT-like protein. | Iron (chelated) transport system membrane protein. | 0.561 |
rnhB | HD_1021 | HD_1026 | HD_1021 | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | Hypothetical protein. | 0.609 |
rnhB | HD_1022 | HD_1026 | HD_1022 | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | Hypothetical protein. | 0.562 |
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