Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HD_1049Conserved hypothetical protein. (247 aa)    
Predicted Functional Partners:
HD_1486
Conserved hypothetical protein.
  
     0.714
HD_1705
Putative coproporphyrinogen III oxidase.
  
    0.708
yihI
Conserved hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.704
HD_0387
Conserved hypothetical protein.
 
     0.636
HD_0318
Possible fimbrial biogenesis and twitching motility protein PilF-like protein.
  
     0.535
priB
Primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
 
     0.511
lsgD
Possible lipooligosaccharide N-acetylglucosamine glycosyltransferase.
  
     0.494
kdkA
3-deoxy-D-mannooctulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
  
     0.470
WaaQ
ADP-heptose--lipooligosaccharide heptosyltransferase III.
  
     0.440
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
       0.418
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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