STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hofBProtein transport protein HofB-like protein, pili/fimbriae biogenesis protein. (464 aa)    
Predicted Functional Partners:
hofC
Pili/fimbriae biogenesis protein.
 
 
 0.997
comE
Competence protein E.
 
 
 
 0.913
HD_1123
Possible prepilin peptidase dependent protein D.
 
  
 0.840
comF
Competence protein F.
  
  
 0.806
HD_1126
Hypothetical protein.
  
 
 0.784
rec2
Recombination protein 2.
 
  
 0.746
HD_1436
Putative phage-related secreted protein; Belongs to the bacterial secretin family.
 
  
 0.706
comA
Possible competence protein A-like protein.
   
 
 0.705
HD_0650
Conserved hypothetical protein.
  
  
 0.648
smf
Smf protein; DNA processing chain A.
 
  
 0.646
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.