STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WaaQADP-heptose--lipooligosaccharide heptosyltransferase III. (344 aa)    
Predicted Functional Partners:
LgtF
UDP-glucose--Lipooligosaccharide beta 1-4 glucosyltransferase.
 
  
 0.886
argG
Argininosuccinate synthetase; Citrulline--aspartate ligase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
     
 0.802
HD_0445
Possible ADP-heptose--lipooligosaccharide heptosyltransferase I.
  
   
 0.732
galU
UTP-glucose-1-phosphate uridylyltransferase; May play a role in stationary phase survival; Belongs to the UDPGP type 2 family.
     
 0.680
waaA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
     
 0.674
galE
UDP-glucose-4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.666
lgtB
Lipooligosaccharide galactosyltransferase II.
 
   
 0.631
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
     
 0.631
waaF
ADP-heptose--lipooligosaccharide heptosyltransferase II.
 
  
 0.627
sgbU
Putative hexulose-6-phosphate isomerase (HUMPI).
      
 0.623
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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