Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sapAPeptide transport periplasmic protein SapA. (560 aa)    
Predicted Functional Partners:
sapB
Peptide transport system permease protein SapB.
 
  
 0.995
sapC
Peptide transport system permease protein SapC.
 
  
 0.971
sapD
Peptide transport system ATP binding protein SapD; Belongs to the ABC transporter superfamily.
 
  
 0.931
dppC
Dipeptide transport system permease protein.
 
 
 0.891
dppB
Dipeptide transport system permease protein.
 
 
 0.886
HD_1671
ABC transporter, ATP-binding protein and permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.885
tyrR
Transcriptional regulatory protein.
       0.774
HD_1670
ABC transporter, permease protein.
 
 
 0.721
sapF
Peptide transport system ATP-binding protein SapF.
 
   
 0.697
dppD
Dipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.679
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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