Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tadBTight adherence protein B. (295 aa)    
Predicted Functional Partners:
tadA
Tight adherence protein A.
 
 
 0.998
rcpA
Rough colony protein A; Belongs to the bacterial secretin family.
 
 
 0.998
HD_1305
Flp operon protein D.
  
 
 0.995
tadC
Tight adherence protein C.
 
  
 0.994
HD_1308
Flp operon protein C.
  
 
 0.989
tadF
Tight adherence protein F.
     
 0.952
tadE
Tight adherence protein E.
  
  
 0.938
HD_1309
Flp operon protein B.
 
  
 0.935
tadD
Tight adherence protein D.
  
  
 0.880
tadG
Tight adherence protein G.
  
  
 0.835
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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