Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HD_1305Flp operon protein D. (373 aa)    
Predicted Functional Partners:
tadB
Tight adherence protein B.
  
 
 0.995
tadC
Tight adherence protein C.
  
 
 0.992
rcpA
Rough colony protein A; Belongs to the bacterial secretin family.
  
 
 0.992
HD_1308
Flp operon protein C.
  
 
 0.992
tadA
Tight adherence protein A.
  
 
 0.988
tadE
Tight adherence protein E.
  
  
 0.900
tadF
Tight adherence protein F.
     
 0.857
tadD
Tight adherence protein D.
  
  
 0.856
tadG
Tight adherence protein G.
  
    0.849
HD_1309
Flp operon protein B.
  
  
 0.823
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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