Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HD_1670ABC transporter, permease protein. (317 aa)    
Predicted Functional Partners:
HD_1671
ABC transporter, ATP-binding protein and permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
HD_1672
ABC transporter, ATP-binding subunit.
 
 0.997
HD_1669
Putative ABC transporter periplasmic binding protein.
 
 0.993
HD_1735
Putative oligopeptide transporter, periplasmic-binding protein.
 
 0.978
dppC
Dipeptide transport system permease protein.
 
 0.976
dppD
Dipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.899
dppF
Dipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.893
sapC
Peptide transport system permease protein SapC.
 
     0.782
sapD
Peptide transport system ATP binding protein SapD; Belongs to the ABC transporter superfamily.
 
     0.742
hbpA
Heme-binding protein A.
 
 0.740
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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