Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hemXPutative uroporphyrinogen III C-methyltransferase. (464 aa)    
Predicted Functional Partners:
hemD
Possible uroporphyrinogen III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
 
 0.988
hemY
HemY protein.
 
  
 0.978
HD_1003
Conserved hypothetical protein.
  
     0.625
holA
DNA polymerase III delta subunit.
  
     0.616
HD_1369
Conserved hypothetical protein.
  
     0.562
HD_1495
Conserved hypothetical protein.
  
   
 0.553
HD_1892
Conserved hypothetical protein.
  
     0.540
HD_1792
Putative lipoprotein.
  
     0.526
aphA
AphA (smp-like) protein.
  
     0.524
lapA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.524
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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