Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HD_1815Putative sulfite reductase; Part of a sulfur-relay system. (111 aa)    
Predicted Functional Partners:
tusD
Conserved hypothetical protein; Could be part of a sulfur-relay system; Belongs to the DsrE/TusD family.
 
 
 0.991
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.954
HD_1903
Conserved hypothetical protein; Belongs to the DsrF/TusC family.
 
  
 0.812
HD_1904
Conserved hypothetical protein.
  
 
 0.731
HD_1814
Probable transport protein; Belongs to the BI1 family.
     
 0.692
sirA
SirA protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
  
   
 0.581
yfeA
Iron (chelated) ABC transporter, periplasmic-binding protein; Belongs to the bacterial solute-binding protein 9 family.
       0.570
yfeB
Iron (chelated) transporter, ATP-binding protein.
       0.570
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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