STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traVType IV conjugative transfer system lipoprotein TraV. (216 aa)    
Predicted Functional Partners:
JV46_02480
Hypothetical protein.
 
   
 0.951
JV46_02450
Hypothetical protein.
 
     0.950
traB
TraB pilus assembly protein.
 
   
 0.950
JV46_02490
Hypothetical protein.
 
     0.895
traL
Type IV conjugative transfer system protein TraL.
 
     0.895
JV46_07670
TraG-like protein; N-terminal region.
 
     0.790
JV46_07690
Conjugative relaxosome accessory transposon protein.
 
     0.790
JV46_07700
TraF-like protein.
 
     0.778
JV46_11390
Hypothetical protein.
 
     0.775
JV46_02510
Hypothetical protein.
  
     0.774
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.