STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acrB3Multidrug efflux pump AcrAB, subunit B3; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1367 aa)    
Predicted Functional Partners:
acrA3
Multidrug efflux pump AcrAB, subunit A3; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.936
acrA4
Multidrug efflux pump AcrAB, subunit A4; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.875
tolB
Tol-pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.845
yajC
Protein translocase SecABDEFGY-YidC-YajC-Ffh-FtsY, subunit YajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.
   
 0.843
JV46_02280
Hypothetical protein.
 
    0.818
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.797
JV46_03450
Hypothetical protein.
       0.773
JV46_03430
ATPase.
 
     0.771
tolC
Type I secretion outer membrane protein TolC.
 
 0.763
acrA6
Multidrug efflux pump AcrAB, subunit A6; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.735
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.