Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JV46_02720 | JV46_04270 | JV46_02720 | JV46_04270 | Hypothetical protein. | SET domain-containing protein. | 0.809 |
JV46_02720 | JV46_05020 | JV46_02720 | JV46_05020 | Hypothetical protein. | Hypothetical protein. | 0.452 |
JV46_02720 | JV46_10710 | JV46_02720 | JV46_10710 | Hypothetical protein. | Ankyrin repeat. | 0.808 |
JV46_03270 | JV46_04270 | JV46_03270 | JV46_04270 | Histone deacetylase or acetoin utilization protein. | SET domain-containing protein. | 0.963 |
JV46_03270 | JV46_05020 | JV46_03270 | JV46_05020 | Histone deacetylase or acetoin utilization protein. | Hypothetical protein. | 0.980 |
JV46_03270 | JV46_10710 | JV46_03270 | JV46_10710 | Histone deacetylase or acetoin utilization protein. | Ankyrin repeat. | 0.863 |
JV46_03270 | atpf1B | JV46_03270 | JV46_17430 | Histone deacetylase or acetoin utilization protein. | F0F1-type ATP synthase, F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.724 |
JV46_04270 | JV46_02720 | JV46_04270 | JV46_02720 | SET domain-containing protein. | Hypothetical protein. | 0.809 |
JV46_04270 | JV46_03270 | JV46_04270 | JV46_03270 | SET domain-containing protein. | Histone deacetylase or acetoin utilization protein. | 0.963 |
JV46_04270 | JV46_04420 | JV46_04270 | JV46_04420 | SET domain-containing protein. | DnaJ-class molecular chaperone; Contains C-terminal Zn finger domain. | 0.888 |
JV46_04270 | JV46_05020 | JV46_04270 | JV46_05020 | SET domain-containing protein. | Hypothetical protein. | 0.903 |
JV46_04270 | JV46_06180 | JV46_04270 | JV46_06180 | SET domain-containing protein. | DnaJ-class molecular chaperone; Contains C-terminal Zn finger domain. | 0.888 |
JV46_04270 | JV46_10710 | JV46_04270 | JV46_10710 | SET domain-containing protein. | Ankyrin repeat. | 0.970 |
JV46_04270 | atpf1B | JV46_04270 | JV46_17430 | SET domain-containing protein. | F0F1-type ATP synthase, F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.979 |
JV46_04270 | cmoA | JV46_04270 | JV46_04260 | SET domain-containing protein. | Methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | 0.803 |
JV46_04270 | cmoB | JV46_04270 | JV46_04250 | SET domain-containing protein. | Methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | 0.805 |
JV46_04270 | dnaJ | JV46_04270 | JV46_27140 | SET domain-containing protein. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.888 |
JV46_04420 | JV46_04270 | JV46_04420 | JV46_04270 | DnaJ-class molecular chaperone; Contains C-terminal Zn finger domain. | SET domain-containing protein. | 0.888 |
JV46_04420 | JV46_10710 | JV46_04420 | JV46_10710 | DnaJ-class molecular chaperone; Contains C-terminal Zn finger domain. | Ankyrin repeat. | 0.421 |
JV46_05020 | JV46_02720 | JV46_05020 | JV46_02720 | Hypothetical protein. | Hypothetical protein. | 0.452 |
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