Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
JV46_04440Diguanylate cyclase domain-containing protein; Contains GGDEF domain. (672 aa)    
Predicted Functional Partners:
JV46_04390
PAS domain S-box-containing protein.
 
 0.997
JV46_06030
PAS domain S-box-containing protein.
  
 0.994
JV46_26920
ATPase; Histidine kinase-, DNA gyrase B-, or HSP90-like.
  
 0.992
JV46_26910
PAS domain S-box-containing protein.
 
 0.991
JV46_26940
CheY-like receiver.
 
 0.991
JV46_29450
Chemotaxis regulator flagellar motor.
 
 0.991
JV46_04370
Response regulator; Contain of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 0.989
JV46_04890
PAS domain S-box-containing protein.
  
 0.988
JV46_18080
Signal transduction histidine kinase.
 
 0.986
JV46_04380
Receiver domain-containing response regulator protein.
  
 0.979
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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