Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JV46_04480Transposase. (268 aa)    
Predicted Functional Partners:
JV46_04510
Transposase.
       0.642
JV46_04430
ABC-2 type transporter permease.
       0.565
JV46_04290
ABC-type Zn2+ transport system, periplasmic component/surface adhesin.
       0.564
JV46_04400
Hypothetical protein.
       0.564
JV46_16940
Hypothetical protein.
     
  0.497
JV46_16950
Pyruvate:ferredoxin oxidoreductase-like protein, alpha subunit.
     
  0.497
JV46_08880
Outer membrane autotransporter barrel domain-containing protein.
       0.469
JV46_09030
Hypothetical protein.
       0.469
JV46_09090
Hypothetical protein.
       0.437
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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