STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JV46_04730NADH:flavin oxidoreductase; Old Yellow Enzyme family. (192 aa)    
Predicted Functional Partners:
JV46_04740
NADH:flavin oxidoreductase; Old Yellow Enzyme family.
     0.993
JV46_23640
Glutamate synthase (NADH), large subunit.
    
 0.873
fumC
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.801
JV46_04720
Permease.
       0.737
JV46_06470
Hypothetical protein.
  
 
 0.693
JV46_04750
Hypothetical protein.
       0.562
JV46_04540
Transcriptional regulator; TetR family.
 
  
 0.535
JV46_09180
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.479
JV46_10750
Aeta-ketoacyl synthase; Belongs to the P-Pant transferase superfamily.
  
 
 0.463
JV46_13790
NAD(P)H:quinone oxidoreductase; Type IV; Belongs to the WrbA family.
  
  
 0.447
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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