STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JV46_06830Laminin; Contains G domain. (653 aa)    
Predicted Functional Partners:
ftsK
DNA translocase FtsK.
   
 
 0.709
JV46_08290
Outer membrane ferrienterochelin/olicin receptor.
    
 
 0.697
btuB
Outer membrane cobalamin receptor protein BtuB.
    
   0.687
JV46_02680
Hypothetical protein; Contains thioredoxin domain.
    
   0.684
acrB3
Multidrug efflux pump AcrAB, subunit B3; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
 0.683
JV46_17980
Subtilisin-like serine protease; Belongs to the peptidase S8 family.
  
 0.679
JV46_06470
Hypothetical protein.
 
 
 0.659
JV46_21110
Hypothetical protein.
    
   0.650
JV46_17990
Hypothetical protein.
   
 0.630
JV46_06820
Laminin; Contains G domain, F5/8 type C domain.
 
    
0.627
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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