STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JV46_079302-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; Catechol pathway. (222 aa)    
Predicted Functional Partners:
JV46_26030
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; Catechol pathway.
  
  
  0.838
JV46_07970
MiaB-like tRNA modifying enzyme.
       0.773
acrB2
Multidrug efflux pump AcrAB, subunit B2; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.765
JV46_07840
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
       0.762
JV46_12040
FAD/FMN-containing dehydrogenase.
  
 
  0.662
JV46_06470
Hypothetical protein.
  
 0.648
sdhD
Succinate dehydrogenase ShdCDAB, subunit D; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
   
 
  0.593
sdhB
Succinate dehydrogenase ShdCDAB, subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
  0.592
sdhC
Succinate dehydrogenase ShdCDAB, subunit C.
   
 
  0.591
JV46_26040
Hypothetical protein; Contains DUF2437 domain.
  
  
  0.536
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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