Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
JV46_08070NADPH-glutathione reductase. (483 aa)    
Predicted Functional Partners:
JV46_08040
Hypothetical protein; Contains glutaredoxin-family domain.
 
 0.965
JV46_10320
Thioredoxin.
   
 
 0.959
pdh2
Pyruvate dehydrogenase 2; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 0.952
JV46_16940
Hypothetical protein.
    
 0.942
JV46_16950
Pyruvate:ferredoxin oxidoreductase-like protein, alpha subunit.
    
 0.942
JV46_12700
2-oxoglutarate dehydrogenase, E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
 0.940
JV46_23640
Glutamate synthase (NADH), large subunit.
     
 0.923
JV46_08870
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Homodimeric.
  
 
 0.906
JV46_12710
2-oxoglutarate dehydrogenase, E1 component.
  
 0.898
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 0.876
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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