STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilWType IV pilus assembly protein PilW. (155 aa)    
Predicted Functional Partners:
pilY1
Type IV pilus assembly tip-associated adhesin PilY1-like protein PilY1.
  
  
 0.926
pilX
Type IV pilus assembly protein PilX.
  
  
 0.910
JV46_13920
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.881
pilE1
Type IV pilus prepilin-type N-terminal cleavage protein PilE2.
 
  
 0.875
pilV
Type IV pilus assembly protein PilV.
 
  
 0.866
JV46_25300
Hypothetical protein.
  
  
 0.427
pilE2
Type IV pilus prepilin-type N-terminal cleavage methylation domain PilE2-containing protein.
  
  
 0.421
fimU
Type IV pilus pilin protein FimU.
 
  
 0.409
JV46_23340
Hypothetical protein.
  
     0.407
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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