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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JV46_14130ABC-type multidrug transport system, ATPase/permease component; Contains ATPase and permease components. (564 aa)    
Predicted Functional Partners:
JV46_06470
Hypothetical protein.
  
 0.987
JV46_10750
Aeta-ketoacyl synthase; Belongs to the P-Pant transferase superfamily.
  
 0.984
yadG
ABC-type polysaccharide/polyol phosphate export system YadHG, subunit G.
 
 0.903
JV46_06070
ABC-type transporter, permease/ATPase component.
  
 
0.896
JV46_23410
acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.866
JV46_14140
Hypothetical protein.
 
     0.852
JV46_14120
Hypothetical protein.
 
 
 0.829
JV46_06480
Thioesterase domain-containing protein; Contains thioesterase domain of type I polyketide synthase or non-ribosomal peptide synthetase.
  
 0.812
aapP
ABC-type amino acid transporter AapJQMP, subunit P.
 
    
0.786
JV46_14170
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
 
 
 0.780
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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