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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JV46_19780Permease. (366 aa)    
Predicted Functional Partners:
JV46_19790
Permease.
 
 0.999
JV46_23890
ABC-type transporter, ATPase component.
 
 
 0.995
JV46_24030
Hypothetical protein; DUF1239 domain.
  
 
 0.930
ostA
Organic solvent tolerance protein OstA; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.874
JV46_13250
DNA polymerase III, chi subunit.
 
     0.639
pepA
Aminopeptidase A/metallo peptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.585
JV46_17680
Integral membrane protein.
  
  
 0.565
JV46_13240
Hypothetical protein.
       0.552
JV46_24110
Stringent starvation protein B.
  
    0.518
JV46_19840
Integral membrane protein.
  
  
 0.494
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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