STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilCType IV pilus assembly major pilin protein PilC. (417 aa)    
Predicted Functional Partners:
pilB
Type IV pilus assembly major pilin protein PilB.
 
 
 0.987
pilD
Type IV pilus assembly major pilin protein PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.960
gspE1
Type II protein secretion system GspDSCFGHIJKLMEO, subunit E1.
 
 
 0.948
gspE2
Type II protein secretion system GspDSCFGHIJKLMEO, subunit E2.
 
 
 0.948
pilM
Type IV pilus assembly protein PilM.
 
 
 
 0.920
pilQ
Type IV pilus secretin protein PilQ.
 
 
 
 0.893
pitT1
Pilus retraction protein PilT 1.
 
  
 0.813
pilO
Tfp pilus assembly protein PilO.
 
 
 
 0.801
pilN
Tfp pilus assembly protein PilN.
 
 
 
 0.800
pitT2
Pilus retraction protein PilT2.
  
   
 0.795
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.