STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JV46_23500O-linked N-acetylglucosamine transferase; SPINDLY family. (667 aa)    
Predicted Functional Partners:
JV46_26770
Hypothetical protein; TIGR03032.
 
      0.871
JV46_16250
Hypothetical protein; Tetratricopeptide repeat.
 
 0.774
JV46_13610
Hypothetical protein; Tetratricopeptide repeat.
 
0.739
JV46_12050
Sulfotransferase domain-containing protein; Contains tetratricopeptide repeat.
 
0.722
JV46_18680
Hypothetical protein; Tetratricopeptide repeat.
  
  
  0.615
JV46_17020
Hypothetical protein; Contains tetratricopeptide repeat.
  
  
  0.605
JV46_15260
Sulfotransferase domain-containing protein; Contains tetratricopeptide repeat.
 
0.563
mrcA
Penicillin-binding protein 1A.
       0.498
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.468
rpsI
SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
       0.426
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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