STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JV46_24330Ferredoxin. (119 aa)    
Predicted Functional Partners:
hox2F
Bidirectional hydrogenase H2FUYH, subunit 2F.
 
 0.993
JV46_10470
Nitrate reductase, catalytic subunit; Quinol-dependent; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.990
ndhE
NADH dehydrogenase, NADH:quinone oxidoreductase NdhABCDEFGHIJKLMN, subunit E.
 
 0.967
ndhM
NADH dehydrogenase, NADH:quinone oxidoreductase NdhABCDEFGHIJKLMN, subunit M.
  
  
 0.835
rdsrL
Transmembrane electron transport complex rDsrKMJOP, subunit L.
    
 0.808
hox2Y
Bidirectional hydrogenase H2FUYH, subunit 2Y.
    
   0.787
hox2H
Bidirectional hydrogenase H2FUYH, subunit 2H; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
    
   0.787
ndhH
NADH dehydrogenase, NADH:quinone oxidoreductase NdhABCDEFGHIJKLMN, subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
  
 
 0.734
JV46_16940
Hypothetical protein.
  
 
 0.725
JV46_16950
Pyruvate:ferredoxin oxidoreductase-like protein, alpha subunit.
  
 
 0.725
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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