Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
JV46_24610 | JV46_24620 | Hypothetical protein; Contains DUF1841 domain. | Hypothetical protein. | 0.762 |
JV46_24610 | JV46_24630 | Hypothetical protein; Contains DUF1841 domain. | Murein endopeptidase, metallo peptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | 0.544 |
JV46_24610 | JV46_24640 | Hypothetical protein; Contains DUF1841 domain. | Hypothetical protein; TIGR00275. | 0.470 |
JV46_24620 | JV46_24610 | Hypothetical protein. | Hypothetical protein; Contains DUF1841 domain. | 0.762 |
JV46_24620 | JV46_24630 | Hypothetical protein. | Murein endopeptidase, metallo peptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | 0.551 |
JV46_24620 | JV46_24640 | Hypothetical protein. | Hypothetical protein; TIGR00275. | 0.476 |
JV46_24630 | JV46_24610 | Murein endopeptidase, metallo peptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | Hypothetical protein; Contains DUF1841 domain. | 0.544 |
JV46_24630 | JV46_24620 | Murein endopeptidase, metallo peptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | Hypothetical protein. | 0.551 |
JV46_24630 | JV46_24640 | Murein endopeptidase, metallo peptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | Hypothetical protein; TIGR00275. | 0.658 |
JV46_24630 | JV46_27340 | Murein endopeptidase, metallo peptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | Permease. | 0.457 |
JV46_24640 | JV46_24610 | Hypothetical protein; TIGR00275. | Hypothetical protein; Contains DUF1841 domain. | 0.470 |
JV46_24640 | JV46_24620 | Hypothetical protein; TIGR00275. | Hypothetical protein. | 0.476 |
JV46_24640 | JV46_24630 | Hypothetical protein; TIGR00275. | Murein endopeptidase, metallo peptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | 0.658 |
JV46_24640 | JV46_27340 | Hypothetical protein; TIGR00275. | Permease. | 0.528 |
JV46_24640 | JV46_27350 | Hypothetical protein; TIGR00275. | Aryl-alcohol dehydrogenase-like oxidoreductase. | 0.516 |
JV46_27340 | JV46_24630 | Permease. | Murein endopeptidase, metallo peptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | 0.457 |
JV46_27340 | JV46_24640 | Permease. | Hypothetical protein; TIGR00275. | 0.528 |
JV46_27340 | JV46_27350 | Permease. | Aryl-alcohol dehydrogenase-like oxidoreductase. | 0.667 |
JV46_27350 | JV46_24640 | Aryl-alcohol dehydrogenase-like oxidoreductase. | Hypothetical protein; TIGR00275. | 0.516 |
JV46_27350 | JV46_27340 | Aryl-alcohol dehydrogenase-like oxidoreductase. | Permease. | 0.667 |