Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JV46_13650 | smg | JV46_13650 | JV46_25860 | Hypothetical protein. | Hypothetical protein; Belongs to the Smg family. | 0.569 |
JV46_13650 | zapD | JV46_13650 | JV46_21710 | Hypothetical protein. | Hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.467 |
JV46_14970 | JV46_22780 | JV46_14970 | JV46_22780 | Periplasmic chaperone for outer membrane proteins Skp. | Hypothetical protein; TIGR02099. | 0.411 |
JV46_14970 | JV46_29000 | JV46_14970 | JV46_29000 | Periplasmic chaperone for outer membrane proteins Skp. | Hypothetical protein. | 0.670 |
JV46_14970 | JV46_29010 | JV46_14970 | JV46_29010 | Periplasmic chaperone for outer membrane proteins Skp. | Signal transduction histidine kinase. | 0.632 |
JV46_14970 | smg | JV46_14970 | JV46_25860 | Periplasmic chaperone for outer membrane proteins Skp. | Hypothetical protein; Belongs to the Smg family. | 0.675 |
JV46_14970 | zapD | JV46_14970 | JV46_21710 | Periplasmic chaperone for outer membrane proteins Skp. | Hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.693 |
JV46_22780 | JV46_14970 | JV46_22780 | JV46_14970 | Hypothetical protein; TIGR02099. | Periplasmic chaperone for outer membrane proteins Skp. | 0.411 |
JV46_22780 | smg | JV46_22780 | JV46_25860 | Hypothetical protein; TIGR02099. | Hypothetical protein; Belongs to the Smg family. | 0.557 |
JV46_22780 | zapD | JV46_22780 | JV46_21710 | Hypothetical protein; TIGR02099. | Hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.446 |
JV46_25890 | JV46_29000 | JV46_25890 | JV46_29000 | Hypothetical protein. | Hypothetical protein. | 0.539 |
JV46_25890 | JV46_29010 | JV46_25890 | JV46_29010 | Hypothetical protein. | Signal transduction histidine kinase. | 0.539 |
JV46_25890 | dprA | JV46_25890 | JV46_25880 | Hypothetical protein. | DNA protecting protein DprA. | 0.765 |
JV46_25890 | pilF | JV46_25890 | JV46_06730 | Hypothetical protein. | Tfp pilus assembly protein PilF. | 0.551 |
JV46_25890 | smg | JV46_25890 | JV46_25860 | Hypothetical protein. | Hypothetical protein; Belongs to the Smg family. | 0.706 |
JV46_25890 | topA | JV46_25890 | JV46_25840 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.531 |
JV46_29000 | JV46_14970 | JV46_29000 | JV46_14970 | Hypothetical protein. | Periplasmic chaperone for outer membrane proteins Skp. | 0.670 |
JV46_29000 | JV46_25890 | JV46_29000 | JV46_25890 | Hypothetical protein. | Hypothetical protein. | 0.539 |
JV46_29000 | JV46_29010 | JV46_29000 | JV46_29010 | Hypothetical protein. | Signal transduction histidine kinase. | 0.928 |
JV46_29000 | dprA | JV46_29000 | JV46_25880 | Hypothetical protein. | DNA protecting protein DprA. | 0.525 |
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