STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JV46_27240Hypothetical protein. (330 aa)    
Predicted Functional Partners:
mrcB
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
       0.773
JV46_27260
Hypothetical protein.
       0.773
JV46_27230
Homoserine dehydrogenase.
       0.716
JV46_27220
Aspartate/tyrosine/aromatic aminotransferase.
       0.704
JV46_29400
Hypothetical protein.
  
     0.593
JV46_16400
Hypothetical protein.
  
     0.541
JV46_23800
Hypothetical protein.
  
     0.538
JV46_24610
Hypothetical protein; Contains DUF1841 domain.
  
     0.471
JV46_08460
Hypothetical protein.
  
     0.403
JV46_25790
Nucleoside-diphosphate-sugar epimerase.
  
     0.402
Your Current Organism:
Solemya velum
NCBI taxonomy Id: 2340
Other names: S. velum gill symbiont, Solemya velum gill symbiont, Solemya velum symbiont
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.