STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF72892.1Putative bacteriophage protein. (188 aa)    
Predicted Functional Partners:
SOPEG_2233
GPW/gp25 family protein; Potential frameshift: common BLAST hit: gi|242241216|ref|YP_002989397.1| phage baseplate assembly protein V; phage baseplate assembly protein V.
  
 
 0.882
AHF74075.1
COG3948 Phage-related baseplate assembly protein.
  
 
 0.878
SOPEG_3583
COG5283 Phage-related tail protein; phage tail-like protein.
  
 
 0.877
AHF74070.1
COG5004 P2-like prophage tail protein X.
  
 
 0.848
AHF72891.1
Hypothetical protein; COG3299 Uncharacterized homolog of phage Mu protein gp47.
  
    0.805
AHF74816.1
Late control gene D protein; COG3500 Phage protein D.
  
  
 0.804
SOPEG_0128
TP901 family phage tail tape measure protein.
       0.790
AHF73500.1
Hypothetical protein.
  
  
 0.526
SOPEG_0134
Uncharacterized protein; Target site duplication generated by insertion of ISSoEn1.
  
  
 0.515
SOPEG_3568
PBSX family phage portal protein; Potential frameshift: common BLAST hit: gi|51596194|ref|YP_070385.1| gpP phage P2 terminase; gpP phage P2 terminase.
  
    0.441
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.