STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mlaDCOG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component. (173 aa)    
Predicted Functional Partners:
mlaF
Putative ABC transporter ATP-binding protein YrbF; COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
 0.999
mlaE
COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 0.999
mlaC
COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
 0.998
mlaB
Uncharacterized protein YrbB; COG3113 Predicted NTP binding protein (contains STAS domain).
  
  0.992
mlaA
ABC transporter outer membrane lipoprotein; COG2853 Surface lipoprotein.
 
   
 0.930
yrbA
YrbA protein; COG5007 Predicted transcriptional regulator, BolA superfamily; Belongs to the BolA/IbaG family.
    
 0.845
lptF
Lipopolysaccharide ABC transporter permease LptF; COG0795 Predicted permeases.
  
   
 0.701
bamD
Outer membrane biogenesis protein BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamA, the core component of the assembly machinery.
  
   
 0.678
degP
HtrA protease/chaperone protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.
     
 0.635
motB1
Flagellar motor protein MotB; Potential frameshift: common BLAST hit: gi|85058003|ref|YP_453705.1| flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB.
   
   0.612
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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