STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOPEG_0230Mu phage DNA transposition protein B; Mu family. (309 aa)    
Predicted Functional Partners:
AHF74052.1
Transposase Mu family.
  
     0.775
SOPEG_2721
COG4383 Mu-like prophage protein gp29; putative phage portal protein.
  
     0.775
SOPEG_2785
Transposase-like Mu; COG3423 Predicted transcriptional regulator; putative DNA-binding protein.
  
     0.775
AHF74336.1
COG4387 Mu-like prophage protein gp36.
  
     0.765
AHF74337.1
Putative phage major capsid protein; COG4397 Mu-like prophage major head subunit gpT.
  
     0.745
SOPEG_2100
Putative prophage exported protein.
 
     0.633
AHF74213.1
COG3423 Predicted transcriptional regulator.
  
     0.515
AHF72878.1
Ner-like regulatory protein; COG3423 Predicted transcriptional regulator.
  
     0.511
SOPEG_1997
Putative prophage transcriptional regulator; Transposase Mu family.
  
     0.502
SOPEG_2469
Putative DNA-binding protein; Target site duplication generated by insertion of ISSoEn1.
  
     0.502
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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