STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntRGluconate utilization system Gnt-I transcriptional repressor; COG1609 Transcriptional regulators. (331 aa)    
Predicted Functional Partners:
fruR
Fructose repressor FruR LacI family; COG1609 Transcriptional regulators.
  
     0.774
gntK
COG3265 Gluconate kinase.
 
 
 0.758
fruB
COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain.
   
 
 0.570
tyrR
COG3283 Transcriptional regulator of aromatic amino acids metabolism.
      
 0.535
barA
Histidine kinase; Potential frameshift: common BLAST hit: gi|261822788|ref|YP_003260894.1| glycerate kinase; glycerate kinase.
    
 
 0.471
ytfT
Putative ABC transporter permease protein; Potential frameshift: common BLAST hit: gi|253690397|ref|YP_003019587.1| inner membrane ABC transporter permease protein YjfF; inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.455
phoR
Phosphate regulon sensor protein PhoR (SphS); COG0642 Signal transduction histidine kinase.
      
 0.448
purR
Purine nucleotide synthesis repressor; COG0791 Cell wall-associated hydrolases (invasion-associated proteins); NLP/P60 protein.
  
   
0.448
nagE
COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
  
  
 0.427
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.413
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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