STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppDDipeptide transport ATP-binding protein DppD; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Dipeptide transport system permease protein DppC; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
gsiC
Glutathione ABC transporter permease GsiC; COG0747 ABC-type dipeptide transport system, periplasmic component; glutathione ABC transporter substrate-binding protein GsiB.
 
 0.984
sapC
Potential frameshift: common BLAST hit: gi|85059489|ref|YP_455191.1| peptide ABC transporter ATP-binding component; antimicrobial peptide ABC transporter ATP-binding component.
     0.976
SOPEG_1489
Putative sugar ABC transporter ATP-binding protein; COG1409 Predicted phosphohydrolases; putative phosphohydrolase; Belongs to the ABC transporter superfamily.
 
    
0.906
ftsE
Cell division transporter ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
    
0.904
mlaF
Putative ABC transporter ATP-binding protein YrbF; COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
     
0.900
pstB
Phosphate transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.855
SOPEG_3307
Oligopeptide ABC transporter ATP-binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
0.823
sapB
COG4168 ABC-type antimicrobial peptide transport system, permease component.
 
     0.793
yejB
Microcin C ABC transporter permease YejB; Potential frameshift: common BLAST hit: gi|294503276|ref|YP_003567338.1| putative substrate-binding transport protein; putative substrate-binding transport protein.
   
 0.701
fhuC
Ferric hydroxamate ABC transporter ATP-binding protein FhuC; ISSoEn2, terminal inverted repeat.
 
     
0.652
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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