STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOPEG_0596Uncharacterized protein; Potential frameshift: common BLAST hit: gi|296103897|ref|YP_003614043.1| gp12; gp12. (160 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor YaeT; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.
  
 
 0.805
AHF73147.1
COG3566 Uncharacterized protein conserved in bacteria.
       0.789
AHF73148.1
Putative phage head morphogenesis protein; COG2369 Uncharacterized protein, homolog of phage Mu protein gp30.
       0.776
AHF73149.1
COG3567 Uncharacterized protein conserved in bacteria.
      0.764
bamD
Outer membrane biogenesis protein BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamA, the core component of the assembly machinery.
   
 
 0.704
AHF73150.1
Hypothetical protein; COG1783 Phage terminase large subunit.
      0.696
bamC
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.686
AHF73151.1
COG3728 Phage terminase, small subunit.
      0.642
yfgM
yfgM; COG2976 Uncharacterized protein conserved in bacteria.
  
    0.580
AHF73140.1
Hypothetical protein.
      0.442
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.