STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF73151.1COG3728 Phage terminase, small subunit. (174 aa)    
Predicted Functional Partners:
AHF73150.1
Hypothetical protein; COG1783 Phage terminase large subunit.
 
  
 0.953
AHF73149.1
COG3567 Uncharacterized protein conserved in bacteria.
     0.890
SOPEG_0596
Uncharacterized protein; Potential frameshift: common BLAST hit: gi|296103897|ref|YP_003614043.1| gp12; gp12.
      0.642
AHF73257.1
D-lyxose isomerase.
  
     0.640
AHF73136.1
Putative bacteriophage protein; COG3299 Uncharacterized homolog of phage Mu protein gp47.
 
    0.580
AHF73148.1
Putative phage head morphogenesis protein; COG2369 Uncharacterized protein, homolog of phage Mu protein gp30.
  
    0.579
AHF73147.1
COG3566 Uncharacterized protein conserved in bacteria.
       0.574
sotA
Sugar efflux transporter B; COG0477 Permeases of the major facilitator superfamily.
  
     0.428
SOPEG_3568
PBSX family phage portal protein; Potential frameshift: common BLAST hit: gi|51596194|ref|YP_070385.1| gpP phage P2 terminase; gpP phage P2 terminase.
  
    0.424
SOPEG_0624
Cupin_2 domain-containing protein; Potential frameshift: common BLAST hit: gi|85058268|ref|YP_453970.1| putative glycosyltransferase; putative glycosyltransferase.
  
     0.410
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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