STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF73154.1Hypothetical protein. (215 aa)    
Predicted Functional Partners:
SOPEG_0594
Uncharacterized protein.
 
      0.749
ssaD
Type III secretion system apparatus SsaD.
   
 
 0.684
SOPEG_0604
Phage 21-like group II holin; COG3772 Phage-related lysozyme (muraminidase); phage lysozyme lysis protein.
       0.554
nagE
COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
    
 
 0.471
ptsG
PTS system glucose-specific transporter subunits IIBC; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
    
 
 0.471
barA
Histidine kinase; Potential frameshift: common BLAST hit: gi|261822788|ref|YP_003260894.1| glycerate kinase; glycerate kinase.
   
 
 0.448
AHF73155.1
Transposase ISSoEn2, IS256 family; Required for the transposition of the insertion element.
       0.438
arcB
Aerobic respiration control sensor protein; COG1242 Predicted Fe-S oxidoreductase; putative Fe-S oxidoreductase.
   
 
 0.408
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.