STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybfEUncharacterized protein ybfE. (95 aa)    
Predicted Functional Partners:
fldA
Flavodoxin FldA; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
 
  
 0.866
fur
COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
      0.807
ilvM
COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit.
  
     0.764
zapC
zapC; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.617
ygdG
Exonuclease IX; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment.
  
     0.597
viaA
Protein ViaA; Potential frameshift: common BLAST hit: gi|50118970|ref|YP_048137.1| regulatory ATPase RavA; regulatory ATPase RavA.
  
     0.582
yifE
YifE; COG0606 Predicted ATPase with chaperone activity; MG(2+) chelatase family protein/ComM-related protein.
  
     0.546
ndpA
UPF0352 protein SOPEG_2801; COG3081 Nucleoid-associated protein; nucleoid-associated protein NdpA; Belongs to the UPF0352 family.
  
    0.534
ycfP
ycfP; COG3150 Predicted esterase; Belongs to the UPF0227 family.
  
     0.492
seqA
Negative modulator of initiation of replication; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
 
    0.487
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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