STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacACOG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (403 aa)    
Predicted Functional Partners:
dacC
D-alanyl-D-alanine carboxypeptidase; Target site duplication generated by insertion of ISSoEn2; Belongs to the peptidase S11 family.
  
  
 
0.902
mlaF
Putative ABC transporter ATP-binding protein YrbF; COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
     
 0.646
ybeD
Putative lipoate regulatory protein YbeD; Belongs to the UPF0250 family.
 
    0.644
lptF
Lipopolysaccharide ABC transporter permease LptF; COG0795 Predicted permeases.
      
 0.629
sufD
Iron-sulfur cluster assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
      
 0.629
lipB
Octanoate-[acyl-carrier-protein]-protein-N- octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
      0.613
ftsI
Essential cell division protein FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
 
 
 0.595
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
   
 
 0.543
mrdA
Penicillin-binding protein 2 (PBP-2); Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
  
 0.539
sufS
Cysteine desulfurase SufS subfamily; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo.
      
 0.535
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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