Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytfPytfP. (120 aa)    
Predicted Functional Partners:
ytfN
COG2911 Uncharacterized protein conserved in bacteria.
     0.962
ytfM
Uncharacterized protein YtfM precursor; COG0729 Outer membrane protein.
    
 0.956
yqjE2
Inner membrane protein YqjE.
  
     0.585
yqjE1
Inner membrane protein YqjE.
  
     0.583
yecM
yecM; COG3102 Uncharacterized protein conserved in bacteria.
  
     0.504
yigP
yigP; COG3165 Uncharacterized protein conserved in bacteria.
  
     0.502
gcvR
COG2716 Glycine cleavage system regulatory protein.
  
     0.485
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.484
helD
DNA helicase IV; COG0210 Superfamily I DNA and RNA helicases.
  
     0.474
damX
DamX an inner membrane protein involved in bile resistance; Non-essential cell division protein.
  
     0.463
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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