STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjtAUPF0391 membrane protein SOPEG_1291; Target site duplication generated by insertion of ISSoEn2. (53 aa)    
Predicted Functional Partners:
osmY
Osmotically inducible protein OsmY; COG2823 Predicted periplasmic or secreted lipoprotein.
  
    0.882
otsA1
CsbD domain-containing protein; COG0380 Trehalose-6-phosphate synthase; Alpha-trehalose-phosphate synthase [UDP-forming]; Belongs to the UPF0337 (CsbD) family.
  
    0.858
ygdR
Putative lipoprotein.
   
    0.794
yraP
21 kDa hemolysin precursor; COG2823 Predicted periplasmic or secreted lipoprotein.
  
    0.714
ygdI
ygdI.
   
    0.705
AHF73567.1
Transposase ISSoEn1, IS5 ssgr IS903 family.
       0.468
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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