STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF73683.1Glycerol-3-phosphate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component. (440 aa)    
Predicted Functional Partners:
SOPEG_1489
Putative sugar ABC transporter ATP-binding protein; COG1409 Predicted phosphohydrolases; putative phosphohydrolase; Belongs to the ABC transporter superfamily.
 0.998
SOPEG_1487
COG1175 ABC-type sugar transport systems, permease components; N-Acetyl-D-glucosamine ABC transport system permease protein.
 0.997
SOPEG_3842
Putative permease component of ABC transporter; Potential frameshift: common BLAST hit: gi|241113697|ref|YP_002973532.1| glycoside hydrolase family 4; glycoside hydrolase family 4.
 
 
 0.959
AHF73402.1
Hypothetical protein.
  
     0.565
SOPEG_3844
Extracellular solute-binding protein family 1; COG1175 ABC-type sugar transport systems, permease components; binding-protein-dependent transport systems inner membrane component.
  
     0.493
AHF74471.1
Hypothetical protein.
  
     0.465
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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