STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOPEG_1701Aminotransferase; Potential frameshift: common BLAST hit: gi|33600515|ref|NP_888075.1| allantoate amidohydrolase; Allantoate amidohydrolase. (405 aa)    
Predicted Functional Partners:
pheA
Bifunctional chorismate mutase/prephenate dehydratase; COG1605 Chorismate mutase.
 
 
 0.969
thrA
Aspartokinase / Homoserine dehydrogenase; COG0527 Aspartokinases; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 0.954
tyrA
Bifunctional chorismate mutase/prephenate dehydrogenase; COG1605 Chorismate mutase.
  
 
 0.948
aspC1
Aminotransferase; COG3203 Outer membrane protein (porin); outer membrane protein F.
   
 0.938
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.937
gdhA
COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.934
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
  
 0.932
SOPEG_1939
Aliphatic amidase amiE; COG5464 Uncharacterized conserved protein; putative phage transposase.
  
 
 0.931
AHF75075.1
COG0031 Cysteine synthase.
  
  
 0.924
gltD
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
  
 
 0.923
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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