STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssaRType III secretion inner membrane protein; COG4790 Type III secretory pathway, component EscR; YscR, SpaR, HrcR, EscR homologous to flagellar export components. (215 aa)    
Predicted Functional Partners:
ssaS
COG4791 Type III secretory pathway, component EscT; putative type III secretion apparatus.
 
 
 0.995
ssaJ
COG4669 Type III secretory pathway, lipoprotein EscJ.
 
 
 0.995
spaR
Type III secretion apparatus SpaR; COG4791 Type III secretory pathway, component EscT.
 
 
 0.994
ssaV
Type III secretion inner membrane channel protein; COG4789 Type III secretory pathway, component EscV; Homologs LcrD, HrcV, EscV, SsaV.
 
 
 0.981
invA
COG1450 Type II secretory pathway, component PulD; type III secretion system outer membrane pore InvG.
 
 
 0.981
ssaU
Type III secretion inner membrane protein; COG4792 Type III secretory pathway, component EscU; YscU, SpaS, EscU, HrcU, SsaU, homologous to flagellar export components.
 
  
 0.980
spaQ
Type III secretion apparatus SpaQ; COG4790 Type III secretory pathway, component EscR; type III secretion system protein SpaP.
 
 
 0.971
ssaN
COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; Homologs YscN, SpaL, MxiB, HrcN, EscN.
 
  
 0.933
ssaC
Type III secretion system apparatus SsaC; COG1450 Type II secretory pathway, component PulD.
 
 
 0.922
invC
COG1157 Flagellar biosynthesis/type III secretory pathway ATPase.
 
  
 0.866
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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