STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF74073.1Phage virion morphogenesis protein. (212 aa)    
Predicted Functional Partners:
SOPEG_2230
P2 phage tail completion R family protein; COG0481 Membrane GTPase LepA; hypothetical protein.
  
    0.965
SOPEG_2223
Putative capsid scaffolding protein; COG1961 Site-specific recombinases, DNA invertase Pin homologs; predicted terminase, ATPase subunit.
  
    0.883
SOPEG_3568
PBSX family phage portal protein; Potential frameshift: common BLAST hit: gi|51596194|ref|YP_070385.1| gpP phage P2 terminase; gpP phage P2 terminase.
  
    0.876
SOPEG_2225
Phage terminase, endonuclease small subunit M; Potential frameshift: common BLAST hit: gi|291282863|ref|YP_003499681.1| putative major capsid protein; putative major capsid protein.
  
    0.858
SOPEG_2233
GPW/gp25 family protein; Potential frameshift: common BLAST hit: gi|242241216|ref|YP_002989397.1| phage baseplate assembly protein V; phage baseplate assembly protein V.
  
    0.856
SOPEG_3583
COG5283 Phage-related tail protein; phage tail-like protein.
  
    0.856
AHF74070.1
COG5004 P2-like prophage tail protein X.
  
    0.850
AHF74076.1
COG4385 Bacteriophage P2-related tail formation protein.
  
    0.816
AHF74817.1
Putative phage late gene regulator.
   
    0.688
AHF74075.1
COG3948 Phage-related baseplate assembly protein.
  
    0.444
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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