STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfcJUncharacterized MFS-type transporter SOPEG_2881; Potential frameshift: common BLAST hit: gi|85059600|ref|YP_455302.1| flagella biosynthesis regulator; flagella biosynthesis regulator. (402 aa)    
Predicted Functional Partners:
fabB
3-oxoacyl-[acyl-carrier-protein] synthase KASI; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
    0.670
AHF74540.1
Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
     0.543
garP
COG0477 Permeases of the major facilitator superfamily.
  
     0.444
gudP2
Putative D-glucarate transporter, membrane protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.429
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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