STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
invFPutative type III secretion apparatus transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (266 aa)    
Predicted Functional Partners:
marR
MarR family transcriptional regulator; Potential frameshift: common BLAST hit: gi|152983649|ref|YP_001351214.1| outer membrane protein; outer membrane protein.
   
  
 0.786
spaQ
Type III secretion apparatus SpaQ; COG4790 Type III secretory pathway, component EscR; type III secretion system protein SpaP.
 
   
 0.784
hilA
Invasion protein regulator; Potential frameshift: common BLAST hit: gi|85060071|ref|YP_455773.1| putative efflux transport protein; putative efflux transport protein.
 
     0.783
ssaJ
COG4669 Type III secretory pathway, lipoprotein EscJ.
  
  
 0.751
ssaC
Type III secretion system apparatus SsaC; COG1450 Type II secretory pathway, component PulD.
 
  
 0.746
spaO
Putative type III secretion apparatus.
 
  
 0.742
invA
COG1450 Type II secretory pathway, component PulD; type III secretion system outer membrane pore InvG.
 
  
 0.715
sicA
Putative type III secretion chaperone; COG0457 FOG: TPR repeat.
  
  
 0.644
ssrA
Secretion system regulator: Sensor component; COG0642 Signal transduction histidine kinase.
  
   
 0.633
ssaH
Putative type III secretion apparatus.
      
 0.620
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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