STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspBUniversal stress protein UspB. (110 aa)    
Predicted Functional Partners:
cspD
Cold shock protein CspD; COG2431 Predicted membrane protein; hypothetical protein.
   
  
 0.640
AHF74792.1
COG1278 Cold shock proteins.
   
  
 0.629
cpxP
COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein.
      
 0.566
oxyR
DNA-binding transcriptional dual regulator OxyR; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
      
 0.537
cspC
COG1278 Cold shock proteins.
   
  
 0.535
yhfG
yhfG.
   
    0.443
AHF74286.1
Hypothetical protein.
   
    0.437
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.