Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0004KEGG: aba:Acid345_0768 tetratricopeptide repeat protein. (531 aa)    
Predicted Functional Partners:
Acid_0005
PFAM: peptidase M20; peptidase M28; KEGG: gvi:gll4423 hypothetical protein.
       0.737
Acid_6889
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr2895 hypothetical protein.
 
  
  0.694
Acid_1652
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: syn:sll0499 hypothetical protein.
 
  
  0.680
Acid_2590
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: syn:sll0499 hypothetical protein.
 
  
  0.671
Acid_0007
KEGG: noc:Noc_1851 TPR repeat protein.
 
    
0.642
Acid_2379
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: syn:sll0499 hypothetical protein.
    
  0.624
Acid_0008
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mca:MCA3003 methyltransferase, UbiE/COQ5 family.
 
     0.575
Acid_0006
PFAM: electron transport protein SCO1/SenC; KEGG: aba:Acid345_3047 electron transport protein SCO1/SenC.
       0.510
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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