Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0010KEGG: sde:Sde_1490 hypothetical protein. (57 aa)    
Predicted Functional Partners:
Acid_0009
Hypothetical protein.
       0.718
Acid_5891
KEGG: pca:Pcar_1771 hypothetical protein.
  
     0.549
Acid_1443
ATP/ADP translocase-like protein; KEGG: msu:MS0135 hypothetical protein.
  
     0.537
Acid_5359
PFAM: peptidase M20; peptidase M28; KEGG: ccr:CC3337 peptidase, M20/M25/M40 family.
  
     0.468
Acid_1855
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lic:LIC10838 glyoxalase.
  
     0.415
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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